› 2nvp

X-ray diffraction
2.2Å resolution

X-Ray Crystal Structure of Protein CPF_0428 from Clostridium perfringens. Northeast Structural Genomics Consortium Target CpR63.

Released:
DOI: 10.2210/pdb2nvp/pdb
PDB entry 2nvp coloured by chain, front view.
PDB entry 2nvp coloured by chain, side view.
PDB entry 2nvp coloured by chain, top view.
Source organism: Clostridium perfringens
Entry authors: Forouhar F, Chen Y, Seetharaman J, Cunningham K, Ma L-C, Fang Y, Baran MC, Xiao R, Acton TB, Montelione GT, Hunt JF, Tong L, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-186906 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoside hydrolase family 125 protein Chain: A
Molecule details ›
Chain: A
Length: 435 amino acids
Theoretical weight: 51.33 KDa
Source organism: Clostridium perfringens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8XNB2 (Residues: 1-427; Coverage: 100%)
Gene name: CPE0426
Sequence domains: Metal-independent alpha-mannosidase (GH125)
Structure domains: Glycosyltransferase

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: P21
Unit cell:
a: 59.857Å b: 47.741Å c: 84.376Å
α: 90° β: 96.03° γ: 90°
R-values:
R R work R free
0.235 0.235 0.245
Expression system: Escherichia coli

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