› 2o34

X-ray diffraction
1.95Å resolution

Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375

Released:
DOI: 10.2210/pdb2o34/pdb
PDB entry 2o34 coloured by chain, front view.
PDB entry 2o34 coloured by chain, side view.
PDB entry 2o34 coloured by chain, top view.
Source organism: Desulfovibrio vulgaris
Entry authors: Malashkevich VN, Toro R, Sauder JM, Schwinn KD, Thompson DA, Rutter ME, Dickey M, Groshong C, Bain KT, Adams JM, Reyes C, Rooney I, Powell A, Boice A, Gheyi T, Ozyurt S, Atwell S, Wasserman SR, Emtage S, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180792 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
ApbE family lipoprotein Chains: A, B
Molecule details ›
Chains: A, B
Length: 250 amino acids
Theoretical weight: 26.92 KDa
Source organism: Desulfovibrio vulgaris
Expression system: Escherichia coli
UniProt:
  • Canonical: Q72D34 (Residues: 2-249; Coverage: 100%)
Gene name: DVU_1097
Structure domains: ApbE-like domains

Ligands and Environments

1 bound ligand:
Ligand NA 3 x NA
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P212121
Unit cell:
a: 60.48Å b: 81.48Å c: 151.17Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.213 0.21 0.273
Expression system: Escherichia coli

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