› 2o8q

X-ray diffraction
1.55Å resolution

CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION

Released:
DOI: 10.2210/pdb2o8q/pdb
PDB entry 2o8q coloured by chain, front view.
PDB entry 2o8q coloured by chain, side view.
PDB entry 2o8q coloured by chain, top view.
Source organism: Paraburkholderia xenovorans LB400
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171857 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cupin type-2 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 134 amino acids
Theoretical weight: 15.09 KDa
Source organism: Paraburkholderia xenovorans LB400
Expression system: Escherichia coli
UniProt:
  • Canonical: Q13HN3 (Residues: 1-133; Coverage: 100%)
Gene name: Bxe_C0505
Sequence domains: Cupin domain
Structure domains: Jelly Rolls

Ligands and Environments

2 bound ligands:
Ligand NI 2 x NI
Ligand EDO 8 x EDO
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL1-5, APS BEAMLINE 23-ID-D
Spacegroup: P42212
Unit cell:
a: 102.255Å b: 102.255Å c: 74.746Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.171 0.17 0.191
Expression system: Escherichia coli

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