› 2od0

X-ray diffraction
1.95Å resolution

The crystal structure of gene product VP1028 from Vibrio parahaemolyticus

Released:
DOI: 10.2210/pdb2od0/pdb
PDB entry 2od0 coloured by chain, front view.
PDB entry 2od0 coloured by chain, side view.
PDB entry 2od0 coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Zhang R, Zhou M, Moy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183366 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DNA transformation protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 105 amino acids
Theoretical weight: 12.15 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q87QX1 (Residues: 1-105; Coverage: 54%)
Gene name: VP1028
Sequence domains: TfoX N-terminal domain
Structure domains: YgaC/TfoX-N like chaperone

Ligands and Environments

2 bound ligands:
Ligand MG 2 x MG
Ligand SO4 9 x SO4
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 42.458Å b: 42.876Å c: 157.9Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.2 0.245
Expression system: Escherichia coli BL21(DE3)

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