› 2od5

X-ray diffraction
1.79Å resolution

CRYSTAL STRUCTURE OF A PUTATIVE NUCLEIC ACID BINDING PROTEIN (JCVI_PEP_1096688149193) FROM UNCULTURED MARINE ORGANISM AT 1.79 A RESOLUTION

Released:
DOI: 10.2210/pdb2od5/pdb
PDB entry 2od5 coloured by chain, front view.
PDB entry 2od5 coloured by chain, side view.
PDB entry 2od5 coloured by chain, top view.
Source organism: uncultured marine organism
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo tetramer
Assembly name:
PDBe Complex ID:
PDB-CPX-163097 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
hypothetical protein Chain: A
Molecule details ›
Chain: A
Length: 116 amino acids
Theoretical weight: 13.19 KDa
Source organism: uncultured marine organism
Expression system: Escherichia coli
Structure domains: Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain

Ligands and Environments

4 bound ligands:
Ligand CL 1 x CL
Ligand IMD 1 x IMD
Ligand EDO 3 x EDO
Ligand 1PE 2 x 1PE
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P6222
Unit cell:
a: 64.406Å b: 64.406Å c: 133.246Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.19 0.189 0.213
Expression system: Escherichia coli

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