› 2odj

X-ray diffraction
2.9Å resolution

Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa

Released:
DOI: 10.2210/pdb2odj/pdb
PDB entry 2odj coloured by chain, front view.
PDB entry 2odj coloured by chain, side view.
PDB entry 2odj coloured by chain, top view.
Source organism: Pseudomonas aeruginosa PAO1
Primary publication:
Structural insight into OprD substrate specificity.
Biswas S, Mohammad MM, Patel DR, Movileanu L, van den Berg B
Nat Struct Mol Biol 14 1108-9 (2007)
PMID: 17952093

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152432 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Porin D Chains: A, B
Molecule details ›
Chains: A, B
Length: 428 amino acids
Theoretical weight: 47.44 KDa
Source organism: Pseudomonas aeruginosa PAO1
Expression system: Escherichia coli
UniProt:
  • Canonical: P32722 (Residues: 26-443; Coverage: 100%)
Gene names: PA0958, oprD
Sequence domains: outer membrane porin, OprD family
Structure domains: Porin

Ligands and Environments

1 bound ligand:
Ligand C8E 8 x C8E
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: C2
Unit cell:
a: 111.37Å b: 97.525Å c: 95.788Å
α: 90° β: 119.63° γ: 90°
R-values:
R R work R free
0.248 0.248 0.315
Expression system: Escherichia coli

Quick links

Citations

10 review citations

Structure, function, and evolution of bacterial ATP-binding cassette systems.
Davidson et al. (2008)
9 more

10 mentions without citation

Carbapenems: past, present, and future.
Papp-Wallace et al. (2011)
9 more