› 2ogr

X-ray diffraction
1.8Å resolution

Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution

Released:
DOI: 10.2210/pdb2ogr/pdb
PDB entry 2ogr coloured by chain, front view.
PDB entry 2ogr coloured by chain, side view.
PDB entry 2ogr coloured by chain, top view.
Source organism: Zoanthus sp.
Primary publication:
[Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom].
Pletneva NV, Pletnev SV, Chudakov DM, Tikhonova TV, Popov VO, Martynov VI, Wlodawer A, Dauter Z, Pletnev VZ
Bioorg Khim 33 421-30 (2007)
PMID: 17886433

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-193616 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
GFP-like fluorescent chromoprotein FP538 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 229 amino acids
Theoretical weight: 26.17 KDa
Source organism: Zoanthus sp.
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9U6Y4 (Residues: 1-231; Coverage: 100%)
Sequence domains: Green fluorescent protein
Structure domains: Green fluorescent protein

Ligands and Environments

No bound ligands
2 modified residues:
Ligand NFA 4 x NFA
Ligand CH7 4 x CH7

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P212121
Unit cell:
a: 87.343Å b: 106.541Å c: 115.674Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.184 0.24
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Fluorescent proteins and their applications in imaging living cells and tissues.
Chudakov et al. (2010)
3 more

1 mention without citation

Structural Consequences of Chromophore Formation and Exploration of Conserved Lid Residues amongst Naturally Occurring Fluorescent Proteins.
Zimmer et al. (2014)