› 2oqm

X-ray diffraction
1.83Å resolution

Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution

Released:
DOI: 10.2210/pdb2oqm/pdb
PDB entry 2oqm coloured by chain, front view.
PDB entry 2oqm coloured by chain, side view.
PDB entry 2oqm coloured by chain, top view.
Source organism: Shewanella denitrificans
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171492 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF1993 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 192 amino acids
Theoretical weight: 21.96 KDa
Source organism: Shewanella denitrificans
Expression system: Escherichia coli
UniProt:
  • Canonical: Q12RS4 (Residues: 1-173; Coverage: 100%)
Gene name: Sden_0562
Sequence domains: Domain of unknown function (DUF1993)
Structure domains: dinb family like domain

Ligands and Environments

3 bound ligands:
Ligand EDO 17 x EDO
Ligand FMT 24 x FMT
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P21
Unit cell:
a: 62.437Å b: 71.722Å c: 93.489Å
α: 90° β: 107.35° γ: 90°
R-values:
R R work R free
0.159 0.157 0.196
Expression system: Escherichia coli

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