› 2p3y

X-ray diffraction
1.8Å resolution

Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics target VpR109

Released:
DOI: 10.2210/pdb2p3y/pdb
PDB entry 2p3y coloured by chain, front view.
PDB entry 2p3y coloured by chain, side view.
PDB entry 2p3y coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Seetharaman J, Neely H, Forouhar F, Wang D, Fang Y, Cunningham K, Ma L-C, Xia R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT, Tong L, Hunt JF, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183317 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF1254 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 491 amino acids
Theoretical weight: 57.01 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87I71 (Residues: 1-483; Coverage: 100%)
Gene name: VPA0735
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 32 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: P1
Unit cell:
a: 61.764Å b: 64.253Å c: 78.524Å
α: 84.81° β: 89.14° γ: 76.47°
R-values:
R R work R free
0.204 0.204 0.234
Expression system: Escherichia coli

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