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› 2p3z

X-ray diffraction
1.8Å resolution

Crystal structure of L-Rhamnonate dehydratase from Salmonella typhimurium

Released:
DOI: 10.2210/pdb2p3z/pdb
Model geometry
Fit model/data
PDB entry 2p3z coloured by chain, front view.
PDB entry 2p3z coloured by chain, side view.
PDB entry 2p3z coloured by chain, top view.
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Entry authors: Malashkevich VN, Sauder JM, Dickey M, Adams JM, Burley SK, Wasserman SR, Gerlt J, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Reaction catalysed: 
L-rhamnonate = 2-dehydro-3-deoxy-L-rhamnonate + H2O.
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo octamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187303 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
L-rhamnonate dehydratase Chains: A, B
Molecule details ›
Chains: A, B
Length: 415 amino acids
Theoretical weight: 45.98 KDa
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8ZNF9 (Residues: 2-405; Coverage: 100%)
Gene names: STM2291, rhmD, yfaW
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand NA 2 x NA
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 31-ID
Spacegroup: F432
Unit cell:
a: 272.248Å b: 272.248Å c: 272.248Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.204 0.201 0.252
Expression system: Escherichia coli

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