› 2pbl

X-ray diffraction
1.79Å resolution

Crystal structure of a putative thioesterase (tm1040_2492) from silicibacter sp. tm1040 at 1.79 A resolution

Released:
DOI: 10.2210/pdb2pbl/pdb
PDB entry 2pbl coloured by chain, front view.
PDB entry 2pbl coloured by chain, side view.
PDB entry 2pbl coloured by chain, top view.
Source organism: Ruegeria sp. TM1040
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172837 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Alpha/beta hydrolase fold-3 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 262 amino acids
Theoretical weight: 29.03 KDa
Source organism: Ruegeria sp. TM1040
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1GDP2 (Residues: 1-261; Coverage: 100%)
Gene name: TM1040_2492
Sequence domains: alpha/beta hydrolase fold
Structure domains: alpha/beta hydrolase

Ligands and Environments

4 bound ligands:
Ligand CL 4 x CL
Ligand UNL 4 x UNL
Ligand MG 1 x MG
Ligand PO4 2 x PO4
1 modified residue:
Ligand MSE 28 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P21
Unit cell:
a: 77.197Å b: 74.438Å c: 95.727Å
α: 90° β: 113.39° γ: 90°
R-values:
R R work R free
0.224 0.221 0.27
Expression system: Escherichia coli

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