› 2pfx

X-ray diffraction
1.7Å resolution

Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution

Released:
DOI: 10.2210/pdb2pfx/pdb
PDB entry 2pfx coloured by chain, front view.
PDB entry 2pfx coloured by chain, side view.
PDB entry 2pfx coloured by chain, top view.
Source organism: Ruegeria sp. TM1040
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172838 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Carboxymuconolactone decarboxylase-like domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 191 amino acids
Theoretical weight: 22.11 KDa
Source organism: Ruegeria sp. TM1040
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1GDR9 (Residues: 1-190; Coverage: 100%)
Gene name: TM1040_2465
Sequence domains: Carboxymuconolactone decarboxylase family
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand ACT 2 x ACT
Ligand PG4 1 x PG4
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 26 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P63
Unit cell:
a: 85.069Å b: 85.069Å c: 105.616Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.117 not available 0.165
Expression system: Escherichia coli

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