2pmz

X-ray diffraction
3.4Å resolution

Archaeal RNA polymerase from Sulfolobus solfataricus

Released:
Primary publication:
The X-ray crystal structure of RNA polymerase from Archaea.
Nature 451 851-4 (2008)
PMID: 18235446

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero undecamer (preferred)
PDBe Complex ID:
PDB-CPX-157658 (preferred)
Entry contents:
11 distinct polypeptide molecules
Macromolecules (11 distinct):
DNA-directed RNA polymerase subunit Rpo1C Chains: C, G
Molecule details ›
Chains: C, G
Length: 392 amino acids
Theoretical weight: 43.55 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: P58192 (Residues: 1-392; Coverage: 100%)
Gene names: SSO0223, rpo1C, rpoA2
Sequence domains: RNA polymerase Rpb1, domain 5
Structure domains: DNA polymerase; domain 1
DNA-directed RNA polymerase subunit Rpo3 Chains: D, S
Molecule details ›
Chains: D, S
Length: 265 amino acids
Theoretical weight: 30.33 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: P95989 (Residues: 1-265; Coverage: 100%)
Gene names: C04_051, SSO0071, rpo3, rpoD
Sequence domains:
Structure domains:
DNA-directed RNA polymerase subunit Rpo7 Chains: E, T
Molecule details ›
Chains: E, T
Length: 180 amino acids
Theoretical weight: 20.35 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q980A3 (Residues: 1-180; Coverage: 100%)
Gene names: SSO0415, rpo7, rpoE
Sequence domains:
Structure domains:
DNA-directed RNA polymerase subunit Rpo4 Chains: F, U
Molecule details ›
Chains: F, U
Length: 113 amino acids
Theoretical weight: 12.83 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q7LXK4 (Residues: 1-113; Coverage: 100%)
Gene names: SSO0751, rpo4, rpoF
Sequence domains: RNA polymerase Rpb4
Structure domains:
DNA-directed RNA polymerase subunit Rpo5 Chains: H, V
Molecule details ›
Chains: H, V
Length: 84 amino acids
Theoretical weight: 9.69 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q980Q9 (Residues: 1-84; Coverage: 100%)
Gene names: SSO5468, rpo5, rpoH
Sequence domains: RNA polymerase Rpb5, C-terminal domain
Structure domains: RPB5-like RNA polymerase subunit
DNA-directed RNA polymerase subunit Rpo6 Chains: K, W
Molecule details ›
Chains: K, W
Length: 95 amino acids
Theoretical weight: 10.87 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q97ZJ9 (Residues: 1-95; Coverage: 100%)
Gene names: SSO6768, rpo6, rpoK
Sequence domains: RNA polymerase Rpb6
Structure domains: Eukaryotic RPB6 RNA polymerase subunit
DNA-directed RNA polymerase subunit Rpo11 Chains: L, X
Molecule details ›
Chains: L, X
Length: 92 amino acids
Theoretical weight: 10.3 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q980K0 (Residues: 1-92; Coverage: 100%)
Gene names: SSO5577, rpo11, rpoL
Sequence domains:
Structure domains: RNA polymerase, RBP11-like subunit
DNA-directed RNA polymerase subunit Rpo10 Chains: N, Y
Molecule details ›
Chains: N, Y
Length: 66 amino acids
Theoretical weight: 7.6 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q980Z8 (Residues: 1-66; Coverage: 100%)
Gene names: SSO5140, rpo10, rpoN
Sequence domains: RNA polymerases N / 8 kDa subunit
Structure domains: Homeodomain-like
DNA-directed RNA polymerase subunit Rpo12 Chains: P, Z
Molecule details ›
Chains: P, Z
Length: 48 amino acids
Theoretical weight: 5.61 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:
  • Canonical: Q97ZX7 (Residues: 1-48; Coverage: 100%)
Gene names: SSO5865, rpo12, rpoP
Structure domains: RNA polymerase ii, chain L

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P21
Unit cell:
a: 125.82Å b: 201.235Å c: 196.05Å
α: 90° β: 100.92° γ: 90°
R-values:
R R work R free
0.274 0.274 0.343