› 2pzh

X-ray diffraction
1.7Å resolution

YbgC thioesterase (Hp0496) from Helicobacter pylori

Released:
DOI: 10.2210/pdb2pzh/pdb
PDB entry 2pzh coloured by chain, front view.
PDB entry 2pzh coloured by chain, side view.
PDB entry 2pzh coloured by chain, top view.
Source organism: Helicobacter pylori 26695
Primary publication:
Structural and enzymatic characterization of HP0496, a YbgC thioesterase from Helicobacter pylori.
Angelini A, Cendron L, Goncalves S, Zanotti G, Terradot L
Proteins 72 1212-21 (2008)
PMID: 18338382

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161132 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Acyl-CoA thioesterase YbgC Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 135 amino acids
Theoretical weight: 15.85 KDa
Source organism: Helicobacter pylori 26695
Expression system: Escherichia coli
UniProt:
  • Canonical: P94842 (Residues: 1-133; Coverage: 100%)
Gene names: HP_0496, ybgC
Sequence domains: Thioesterase superfamily
Structure domains: Hotdog Thioesterase

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-3
Spacegroup: P212121
Unit cell:
a: 49.86Å b: 99.206Å c: 107.288Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.211 0.209 0.251
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Iterative type I polyketide synthases involved in enediyne natural product biosynthesis.
Chen et al. (2014)
1 more

6 mentions without citation

Thioesterases: a new perspective based on their primary and tertiary structures.
Cantu et al. (2010)
5 more