› 2pzz

X-ray diffraction
2.2Å resolution

2.2 A resolution crystal structure of UPF0201 protein from Methanococcus jannaschii

Released:
DOI: 10.2210/pdb2pzz/pdb
PDB entry 2pzz coloured by chain, front view.
PDB entry 2pzz coloured by chain, side view.
PDB entry 2pzz coloured by chain, top view.
Source organism: Methanocaldococcus jannaschii DSM 2661
Primary publication:
UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.
Rao KN, Burley SK, Swaminathan S
PLoS One 3 e3903 (2008)
PMID: 19079550

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-176718 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0201 protein MJ1564 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 147 amino acids
Theoretical weight: 16.9 KDa
Source organism: Methanocaldococcus jannaschii DSM 2661
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q58959 (Residues: 2-139; Coverage: 81%)
Gene name: MJ1564
Sequence domains: RNA binding
Structure domains: 50s Ribosomal Protein L5; Chain: A,

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: P1
Unit cell:
a: 46.52Å b: 50.15Å c: 73.82Å
α: 70.34° β: 72.61° γ: 84.3°
R-values:
R R work R free
0.249 0.249 0.299
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 citations in other articles

Expression, purification and structural analysis of the Pyrococcus abyssi RNA binding protein PAB1135.
Luz et al. (2010)

1 mention without citation

UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.
Rao et al. (2008)