› 2qhq

X-ray diffraction
1.76Å resolution

Crystal structure of unknown function protein VPA0580

Released:
DOI: 10.2210/pdb2qhq/pdb
PDB entry 2qhq coloured by chain, front view.
PDB entry 2qhq coloured by chain, side view.
PDB entry 2qhq coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Chang C, Kim Y, Volkart L, Abdullah J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183321 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Type III effector Chains: A, B
Molecule details ›
Chains: A, B
Length: 125 amino acids
Theoretical weight: 14.32 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87IM6 (Residues: 1-122; Coverage: 100%)
Gene name: VPA0580
Sequence domains: HopJ type III effector protein
Structure domains: vpa0580 domain like

Ligands and Environments

1 bound ligand:
Ligand ACT 1 x ACT
2 modified residues:
Ligand MSE 10 x MSE
Ligand MLY 10 x MLY

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P212121
Unit cell:
a: 34.796Å b: 80.851Å c: 87.774Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.172 0.17 0.209
Expression system: Escherichia coli

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