› 2qip

X-ray diffraction
1.48Å resolution

Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633

Released:
DOI: 10.2210/pdb2qip/pdb
PDB entry 2qip coloured by chain, front view.
PDB entry 2qip coloured by chain, side view.
PDB entry 2qip coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Tan K, Duggan E, Moy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189535 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NYN domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 165 amino acids
Theoretical weight: 18.99 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9AF14 (Residues: 1-162; Coverage: 100%)
Gene names: CA163_03205, FVP01_04060, HKB16_12075, HKB21_11250, I7278_06060
Sequence domains: NYN domain
Structure domains: 5'-nuclease

Ligands and Environments

1 bound ligand:
Ligand EDO 6 x EDO
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I222
Unit cell:
a: 62.207Å b: 75.034Å c: 80.418Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.163 0.162 0.183
Expression system: Escherichia coli BL21

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