› 2qm2

X-ray diffraction
2.09Å resolution

Putative HopJ type III effector protein from Vibrio parahaemolyticus

Released:
DOI: 10.2210/pdb2qm2/pdb
PDB entry 2qm2 coloured by chain, front view.
PDB entry 2qm2 coloured by chain, side view.
PDB entry 2qm2 coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Kim Y, Chang C, Volkart L, Abdullah J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
homo tetramer
Assembly name:
PDBe Complex ID:
PDB-CPX-183321 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Type III effector Chains: A, B
Molecule details ›
Chains: A, B
Length: 125 amino acids
Theoretical weight: 14.19 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q87IM6 (Residues: 1-122; Coverage: 100%)
Gene name: VPA0580
Sequence domains: HopJ type III effector protein
Structure domains: vpa0580 domain like

Ligands and Environments

4 bound ligands:
Ligand K 1 x K
Ligand GOL 1 x GOL
Ligand NA 1 x NA
Ligand TRS 1 x TRS
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: C2221
Unit cell:
a: 87.622Å b: 90.886Å c: 72.445Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.217 0.209 0.281
Expression system: Escherichia coli BL21(DE3)

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