› 2r5s

X-ray diffraction
2.14Å resolution

The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633

Released:
DOI: 10.2210/pdb2r5s/pdb
PDB entry 2r5s coloured by chain, front view.
PDB entry 2r5s coloured by chain, side view.
PDB entry 2r5s coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Tan K, Wu R, Abdullah J, Freeman L, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183370 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Thioredoxin domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 176 amino acids
Theoretical weight: 19.81 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q87RI8 (Residues: 112-284; Coverage: 61%)
Gene name: VP0806
Sequence domains:
Structure domains: Tetratricopeptide repeat domain

Ligands and Environments

3 bound ligands:
Ligand MES 4 x MES
Ligand EDO 3 x EDO
Ligand ACT 1 x ACT
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: C2
Unit cell:
a: 53.001Å b: 116.476Å c: 62.224Å
α: 90° β: 88.75° γ: 90°
R-values:
R R work R free
0.227 0.223 0.279
Expression system: Escherichia coli BL21

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