› 2rd9

X-ray diffraction
2.3Å resolution

Crystal structure of a putative yfit-like metal-dependent hydrolase (bh0186) from bacillus halodurans c-125 at 2.30 A resolution

Released:
DOI: 10.2210/pdb2rd9/pdb
PDB entry 2rd9 coloured by chain, front view.
PDB entry 2rd9 coloured by chain, side view.
PDB entry 2rd9 coloured by chain, top view.
Source organism: Alkalihalobacillus halodurans C-125
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
homo tetramer
Assembly name:
PDBe Complex ID:
PDB-CPX-191876 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DinB-like domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 193 amino acids
Theoretical weight: 22.89 KDa
Source organism: Alkalihalobacillus halodurans C-125
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9KGB8 (Residues: 1-174; Coverage: 100%)
Gene name: BH0186
Sequence domains: DinB superfamily
Structure domains: dinb family like domain

Ligands and Environments

3 bound ligands:
Ligand NI 4 x NI
Ligand IMD 5 x IMD
Ligand GOL 7 x GOL
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P213
Unit cell:
a: 147.33Å b: 147.33Å c: 147.33Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.155 0.152 0.201
Expression system: Escherichia coli

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