› 2v5i

X-ray diffraction
1.6Å resolution

Structure of the receptor-binding protein of bacteriophage Det7: a podoviral tailspike in a myovirus

Released:
DOI: 10.2210/pdb2v5i/pdb
PDB entry 2v5i coloured by chain, front view.
PDB entry 2v5i coloured by chain, side view.
PDB entry 2v5i coloured by chain, top view.
Source organism: Bacteriophage sp.
Primary publication:
Structure of the receptor-binding protein of bacteriophage det7: a podoviral tail spike in a myovirus.
Walter M, Fiedler C, Grassl R, Biebl M, Rachel R, Hermo-Parrado XL, Llamas-Saiz AL, Seckler R, Miller S, van Raaij MJ
J Virol 82 2265-73 (2008)
PMID: 18077713

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-163261 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
SALMONELLA TYPHIMURIUM DB7155 BACTERIOPHAGE DET7 TAILSPIKE Chain: A
Molecule details ›
Chain: A
Length: 559 amino acids
Theoretical weight: 59.48 KDa
Source organism: Bacteriophage sp.
Expression system: Escherichia coli
Structure domains: Pectate Lyase C-like

Ligands and Environments

1 bound ligand:
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: R32
Unit cell:
a: 100.433Å b: 100.433Å c: 330.042Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.142 0.141 0.17
Expression system: Escherichia coli

Quick links

Citations

10 review citations

Bacteriophage-encoded virion-associated enzymes to overcome the carbohydrate barriers during the infection process.
Latka et al. (2017)
9 more

4 mentions without citation

Structure of the receptor-binding protein of bacteriophage det7: a podoviral tail spike in a myovirus.
Walter et al. (2008)
3 more