› 2vf6

X-ray diffraction
2.1Å resolution

Human FDPS synthase in complex with minodronate

Released:
DOI: 10.2210/pdb2vf6/pdb
PDB entry 2vf6 coloured by chain, front view.
PDB entry 2vf6 coloured by chain, side view.
PDB entry 2vf6 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Evdokimov AG, Barnett BL, Ebetino FH, Pokross M

Function and Biology Details

Reactions catalysed: 
Prenyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate
Geranyl diphosphate + isopentenyl diphosphate = diphosphate + (2E,6E)-farnesyl diphosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-146902 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Farnesyl pyrophosphate synthase Chain: A
Molecule details ›
Chain: A
Length: 378 amino acids
Theoretical weight: 43.47 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P14324 (Residues: 66-419; Coverage: 85%)
Gene names: FDPS, FPS, KIAA1293
Sequence domains: Polyprenyl synthetase
Structure domains: Farnesyl Diphosphate Synthase

Ligands and Environments

2 bound ligands:
Ligand M0N 1 x M0N
Ligand MG 3 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P41212
Unit cell:
a: 111.207Å b: 111.207Å c: 69.059Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.199 0.259
Expression system: Escherichia coli BL21(DE3)

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