› 2vf9

X-ray diffraction
3.5Å resolution

Crystal structure of bacteriophage PRR1

Released:
DOI: 10.2210/pdb2vf9/pdb
PDB entry 2vf9 coloured by chain, front view.
PDB entry 2vf9 coloured by chain, side view.
PDB entry 2vf9 coloured by chain, top view.
Source organism: Pseudomonas phage PRR1
Primary publication:
The capsid of the small RNA phage PRR1 is stabilized by metal ions.
Persson M, Tars K, Liljas L
J Mol Biol 383 914-22 (2008)
PMID: 18786545

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137177 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 131 amino acids
Theoretical weight: 14.57 KDa
Source organism: Pseudomonas phage PRR1
Expression system: Escherichia coli
UniProt:
  • Canonical: P03616 (Residues: 1-131; Coverage: 100%)
Sequence domains: Levivirus coat protein
Structure domains: MS2 Viral Coat Protein

Ligands and Environments

1 bound ligand:
Ligand CA 1 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-1
Spacegroup: P1
Unit cell:
a: 281.4Å b: 285.4Å c: 472.5Å
α: 93.27° β: 90° γ: 119.44°
R-values:
R R work R free
0.311 0.311 0.313
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Construction and characterization of virus-like particles: a review.
Zeltins A. (2013)
3 more

3 mentions without citation

Deep-learning contact-map guided protein structure prediction in CASP13.
Zheng et al. (2019)
2 more