› 2xir

X-ray diffraction
1.5Å resolution

Crystal structure of the VEGFR2 kinase domain in complex with PF- 00337210 (N,2-dimethyl-6-(7-(2-morpholinoethoxy)quinolin-4-yloxy) benzofuran-3-carboxamide)

Released:
DOI: 10.2210/pdb2xir/pdb
PDB entry 2xir coloured by chain, front view.
PDB entry 2xir coloured by chain, side view.
PDB entry 2xir coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: McTigue M, Wickersham J, Pinko C, Hong Y, Marrone T

Function and Biology Details

Reaction catalysed: 
ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153084 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vascular endothelial growth factor receptor 2 Chain: A
Molecule details ›
Chain: A
Length: 316 amino acids
Theoretical weight: 36.19 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P35968 (Residues: 806-1171; Coverage: 24%)
Gene names: FLK1, KDR, VEGFR2
Sequence domains: Protein tyrosine and serine/threonine kinase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand 00J 1 x 00J
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: C2
Unit cell:
a: 135.267Å b: 56.827Å c: 52.187Å
α: 90° β: 94.18° γ: 90°
R-values:
R R work R free
0.219 0.217 0.238
Expression system: Not provided

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