› 2y0k

X-ray diffraction
2.3Å resolution

Crystal Structure of Pseudomonas Aeruginosa OpdO

Released:
DOI: 10.2210/pdb2y0k/pdb
PDB entry 2y0k coloured by chain, front view.
PDB entry 2y0k coloured by chain, side view.
PDB entry 2y0k coloured by chain, top view.
Source organism: Pseudomonas aeruginosa PAO1
Entry authors: Touw DS, Vijayaraghavan J, Vandenberg B

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-191281 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyroglutatmate porin OpdO Chain: A
Molecule details ›
Chain: A
Length: 390 amino acids
Theoretical weight: 42.68 KDa
Source organism: Pseudomonas aeruginosa PAO1
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9I202 (Residues: 26-409; Coverage: 100%)
Gene names: PA2113, opdO
Sequence domains: outer membrane porin, OprD family
Structure domains: Porin

Ligands and Environments

1 bound ligand:
Ligand C8E 11 x C8E
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X6A
Spacegroup: C2
Unit cell:
a: 149.455Å b: 78.929Å c: 50.761Å
α: 90° β: 91.19° γ: 90°
R-values:
R R work R free
0.2 0.196 0.243
Expression system: Escherichia coli BL21

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