› 2ygh

X-ray diffraction
2.6Å resolution

SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine

Released:
DOI: 10.2210/pdb2ygh/pdb
PDB entry 2ygh coloured by chain, front view.
PDB entry 2ygh coloured by chain, side view.
PDB entry 2ygh coloured by chain, top view.
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis
Primary publication:
RNA tertiary interactions in a riboswitch stabilize the structure of a kink turn.
Schroeder KT, Daldrop P, Lilley DM
Structure 19 1233-40 (2011)
PMID: 21893284

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195850 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
SAM-I RIBOSWITCH Chain: A
Molecule details ›
Chain: A
Length: 95 nucleotides
Theoretical weight: 30.88 KDa
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis
Expression system: Not provided
Sequence domains: SAM riboswitch (S box leader)

Ligands and Environments

3 bound ligands:
Ligand SAM 1 x SAM
Ligand NA 4 x NA
Ligand K 1 x K
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM14
Spacegroup: P43212
Unit cell:
a: 58.46Å b: 58.46Å c: 155.26Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.205 0.2 0.259
Expression system: Not provided

Quick links

Citations

12 review citations

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
11 more

8 mentions without citation

Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems.
Adams et al. (2013)
7 more