› 2yhc

X-ray diffraction
1.8Å resolution

Structure of BamD from E. coli

Released:
DOI: 10.2210/pdb2yhc/pdb
Model geometry
Fit model/data
PDB entry 2yhc coloured by chain, front view.
PDB entry 2yhc coloured by chain, side view.
PDB entry 2yhc coloured by chain, top view.
Source organism: Escherichia coli BL21(DE3)
Primary publication:
Structural basis of outer membrane protein biogenesis in bacteria.
Albrecht R, Zeth K
J Biol Chem 286 27792-803 (2011)
PMID: 21586578

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-142225 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Outer membrane protein assembly factor BamD Chain: A
Molecule details ›
Chain: A
Length: 225 amino acids
Theoretical weight: 25.96 KDa
Source organism: Escherichia coli BL21(DE3)
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P0AC02 (Residues: 29-245; Coverage: 96%)
Gene names: JW2577, b2595, bamD, yfiO
Sequence domains: Outer membrane lipoprotein
Structure domains: Tetratricopeptide repeat domain

Ligands and Environments

1 bound ligand:
Ligand URE 1 x URE
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P21
Unit cell:
a: 53.112Å b: 33.428Å c: 57.783Å
α: 90° β: 111.41° γ: 90°
R-values:
R R work R free
0.2 0.198 0.233
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

10 review citations

The β-barrel assembly machinery in motion.
Noinaj et al. (2017)
9 more

11 mentions without citation

The Bam machine: a molecular cooper.
Ricci et al. (2012)
10 more