› 2yy6

X-ray diffraction
2.3Å resolution

Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5

Released:
DOI: 10.2210/pdb2yy6/pdb
PDB entry 2yy6 coloured by chain, front view.
PDB entry 2yy6 coloured by chain, side view.
PDB entry 2yy6 coloured by chain, top view.
Source organism: Aquifex aeolicus VF5
Entry authors: Tanaka T, Kumarevel TS, Kuramitsu S, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
2-phosphoglycolate + H(2)O = glycolate + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130486 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphoglycolate phosphatase Chains: A, B
Molecule details ›
Chains: A, B
Length: 213 amino acids
Theoretical weight: 24.02 KDa
Source organism: Aquifex aeolicus VF5
Expression system: Escherichia coli
UniProt:
  • Canonical: O67359 (Residues: 1-213; Coverage: 100%)
Gene names: aq_1342, gph
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand SO4 2 x SO4
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: P31
Unit cell:
a: 96.247Å b: 96.247Å c: 50.703Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.236 0.236 0.276
Expression system: Escherichia coli

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