› 2z1c

X-ray diffraction
1.8Å resolution

Crystal structure of HypC from Thermococcus kodakaraensis KOD1

Released:
DOI: 10.2210/pdb2z1c/pdb
PDB entry 2z1c coloured by chain, front view.
PDB entry 2z1c coloured by chain, side view.
PDB entry 2z1c coloured by chain, top view.
Source organism: Thermococcus kodakarensis KOD1
Primary publication:
Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling.
Watanabe S, Matsumi R, Arai T, Atomi H, Imanaka T, Miki K
Mol Cell 27 29-40 (2007)
PMID: 17612488

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177315 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hydrogenase expression/formation protein HypC Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 75 amino acids
Theoretical weight: 8.26 KDa
Source organism: Thermococcus kodakarensis KOD1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5JII0 (Residues: 1-75; Coverage: 100%)
Gene names: TK2001, Tk-hypC
Sequence domains: HupF/HypC family
Structure domains: SH3 type barrels.

Ligands and Environments

2 bound ligands:
Ligand GOL 1 x GOL
Ligand PG4 1 x PG4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: C2
Unit cell:
a: 78.237Å b: 59.13Å c: 53.973Å
α: 90° β: 109.01° γ: 90°
R-values:
R R work R free
0.223 0.222 0.246
Expression system: Escherichia coli

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Citations

7 review citations

The ferredoxin/thioredoxin system of oxygenic photosynthesis.
Schürmann et al. (2008)
6 more

4 mentions without citation

Assessing the accuracy of template-based structure prediction metaservers by comparison with structural genomics structures.
Gront et al. (2012)
3 more