› 2zah

X-ray diffraction
2.81Å resolution

X-ray structure of Melon necrotic spot virus

Released:
DOI: 10.2210/pdb2zah/pdb
PDB entry 2zah coloured by chain, front view.
PDB entry 2zah coloured by chain, side view.
PDB entry 2zah coloured by chain, top view.
Source organism: Melon necrotic spot virus
Primary publication:
The structure of melon necrotic spot virus determined at 2.8 A resolution.
Wada Y, Tanaka H, Yamashita E, Kubo C, Ichiki-Uehara T, Nakazono-Nagaoka E, Omura T, Tsukihara T
Acta Crystallogr Sect F Struct Biol Cryst Commun 64 8-13 (2008)
PMID: 18097092

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148785 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 331 amino acids
Theoretical weight: 35.78 KDa
Source organism: Melon necrotic spot virus
UniProt:
  • Canonical: P19899 (Residues: 60-390; Coverage: 85%)
Gene name: ORF4
Sequence domains: Viral coat protein (S domain)
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CA 4 x CA
Ligand UNX 1 x UNX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: I23
Unit cell:
a: 375.004Å b: 375.004Å c: 375.004Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.209 0.208 0.224

Quick links

Citations

1 review citation

An Update on the Intracellular and Intercellular Trafficking of Carmoviruses.
Navarro et al. (2017)
6 other articles

6 mentions without citation

A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses.
Diemer et al. (2012)
5 more