› 2zul

X-ray diffraction
1.8Å resolution

Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine

Released:
DOI: 10.2210/pdb2zul/pdb
PDB entry 2zul coloured by chain, front view.
PDB entry 2zul coloured by chain, side view.
PDB entry 2zul coloured by chain, top view.
Source organism: Thermus thermophilus HB8
Entry authors: Wang H, Kawazoe M, Tatsuguchi A, Naoe C, Takemoto C, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178115 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Methyltransferase small domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 375 amino acids
Theoretical weight: 40.71 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SKW0 (Residues: 1-375; Coverage: 100%)
Gene name: TTHA0533
Sequence domains: Methyltransferase small domain
Structure domains: Vaccinia Virus protein VP39

Ligands and Environments

1 bound ligand:
Ligand SAM 1 x SAM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A, PHOTON FACTORY BEAMLINE BL-5A
Spacegroup: P212121
Unit cell:
a: 50.852Å b: 80.072Å c: 93.632Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.183 0.183 0.217
Expression system: Escherichia coli

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