› 2zzs

X-ray diffraction
1.8Å resolution

Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633

Released:
DOI: 10.2210/pdb2zzs/pdb
PDB entry 2zzs coloured by chain, front view.
PDB entry 2zzs coloured by chain, side view.
PDB entry 2zzs coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Akazaki H, Kawai F, Kumaki Y, Sekine K, Hakamata W, Nishio T, Park S-Y, Oku T

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183344 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c domain-containing protein Chains: 1, 2, 3, 4, 5, 6, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
Molecule details ›
Chains: 1, 2, 3, 4, 5, 6, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
Length: 103 amino acids
Theoretical weight: 10.47 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87MF5 (Residues: 1-103; Coverage: 100%)
Gene name: VP2300
Sequence domains: Cytochrome c
Structure domains: Cytochrome c-like domain

Ligands and Environments

2 bound ligands:
Ligand HEC 32 x HEC
Ligand GOL 4 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P1
Unit cell:
a: 84.949Å b: 87.612Å c: 103.847Å
α: 71.5° β: 72.98° γ: 83.68°
R-values:
R R work R free
0.195 0.193 0.242
Expression system: Escherichia coli

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