› 335d

X-ray diffraction
2.4Å resolution

THE CRYSTAL STRUCTURE OF THE DNA DECAMER D(GGCAATTGCG) CONTAINS BOTH MAJOR AND MINOR GROOVE BINDING G.(G.C) TRIPLETS

Released:
DOI: 10.2210/pdb335d/pdb
PDB entry 335d coloured by chain, front view.
PDB entry 335d coloured by chain, side view.
PDB entry 335d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of the DNA decamer d(GGCAATTGCG) contains both major- and minor-groove binding G.(G.C) base triplets.
Nunn CM, Neidle S
Acta Crystallogr D Biol Crystallogr 54 577-83 (1998)
PMID: 9761852

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116006 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*GP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.09 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: I212121
Unit cell:
a: 27.92Å b: 39.21Å c: 54.04Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.203 0.203 not available
Expression system: Not provided

Quick links

Citations

1 citations in other articles

Influence of ions, hydration, and the transcriptional inhibitor P4N on the conformations of the Sp1 binding site.
Dohm et al. (2005)

1 mention without citation

Expression of activin receptors in the equine uteroplacental tissue: an immunohistochemical analysis.
Kimura et al. (2018)