› 361d

X-ray diffraction
3Å resolution

CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP

Released:
DOI: 10.2210/pdb361d/pdb
PDB entry 361d coloured by chain, front view.
PDB entry 361d coloured by chain, side view.
PDB entry 361d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structure of domain E of Thermus flavus 5S rRNA: a helical RNA structure including a hairpin loop.
Perbandt M, Nolte A, Lorenz S, Bald R, Betzel C, Erdmann VA
FEBS Lett 429 211-5 (1998)
PMID: 9650592

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196618 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*C P*UP*GP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 20 nucleotides
Theoretical weight: 6.48 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: P3221
Unit cell:
a: 42.68Å b: 42.68Å c: 161.2Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.241 0.241 0.318
Expression system: Not provided

Quick links

Citations

1 review citation

5 S rRNA: structure and interactions.
Szymański et al. (2003)
16 other articles

3 mentions without citation

Computational approaches to 3D modeling of RNA.
Laing et al. (2010)
2 more