› 364d

X-ray diffraction
3Å resolution

3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA

Released:
DOI: 10.2210/pdb364d/pdb
PDB entry 364d coloured by chain, front view.
PDB entry 364d coloured by chain, side view.
PDB entry 364d coloured by chain, top view.
Source organism: Escherichia coli
Primary publication:
Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain.
Correll CC, Freeborn B, Moore PB, Steitz TA
Cell 91 705-12 (1997)
PMID: 9393863

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196619 (preferred)
Entry contents:
3 distinct RNA molecules
Macromolecules (3 distinct):
RNA (5'-R(*UP*GP*)-D(*(1SC)P*)-R(*CP*UP*GP*GP*CP*GP*GP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 11 nucleotides
Theoretical weight: 3.53 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
RNA (5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*GP*UP*GP*GP*GP*G *UP*C)-3') Chain: B
Molecule details ›
Chain: B
Length: 19 nucleotides
Theoretical weight: 6.17 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
RNA (5'-R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP*GP*CP*CP*AP*GP*GP*CP*AP*U)-3') Chain: C
Molecule details ›
Chain: C
Length: 31 nucleotides
Theoretical weight: 10.01 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli

Ligands and Environments

1 bound ligand:
Ligand MG 12 x MG
1 modified residue:
Ligand 1SC 1 x 1SC

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE A1
Spacegroup: P6122
Unit cell:
a: 59.03Å b: 59.03Å c: 254.07Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.272 0.272 0.324
Expression system: Escherichia coli

Quick links

Citations

45 review citations

How RNA folds.
Tinoco et al. (1999)
44 more

6 mentions without citation

Update on tick-borne rickettsioses around the world: a geographic approach.
Parola et al. (2013)
5 more