› 377d

X-ray diffraction
1.76Å resolution

5'-R(*CP*GP*UP*AP*CP*DG)-3'

Released:
DOI: 10.2210/pdb377d/pdb
PDB entry 377d coloured by chain, front view.
PDB entry 377d coloured by chain, side view.
PDB entry 377d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
1.76 A structure of a pyrimidine start alternating A-RNA hexamer r(CGUAC)dG.
Biswas R, Mitra SN, Sundaralingam M
Acta Crystallogr D Biol Crystallogr 54 570-6 (1998)
PMID: 9761851

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196620 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3') Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 6 nucleotides
Theoretical weight: 1.88 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU R-AXIS II
Spacegroup: C2221
Unit cell:
a: 29.53Å b: 44.61Å c: 94.18Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.188 0.232
Expression system: Not provided

Quick links

Citations

3 citation in other articles

Predicting RNA pseudoknot folding thermodynamics.
Cao et al. (2006)
2 more