› 386d

X-ray diffraction
1.8Å resolution

THREE-DIMENSIONAL STRUCTURE AND REACTIVITY OF A PHOTOCHEMICAL CLEAVAGE AGENT BOUND TO DNA

Released:
DOI: 10.2210/pdb386d/pdb
PDB entry 386d coloured by chain, front view.
PDB entry 386d coloured by chain, side view.
PDB entry 386d coloured by chain, top view.
Source organism: Unidentified
Primary publication:
Three-Dimensional Structure and Reactivity of a Photochemical Cleavage Agent Bound to DNA
Gasper SM, Armitage B, Shui X, Hu GG, Yu C, Schuster G, Williams LD
J. Am. Chem. Soc. 120 12402-12409 (1998)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116044 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Unidentified
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand AQS 1 x AQS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P6522
Unit cell:
a: 31.02Å b: 31.02Å c: 64.91Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.196 0.268
Expression system: Not provided

Quick links

Citations

2 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
1 more