› 399d

X-ray diffraction
1.9Å resolution

STRUCTURE OF D(CGCCCGCGGGCG)

Released:
DOI: 10.2210/pdb399d/pdb
PDB entry 399d coloured by chain, front view.
PDB entry 399d coloured by chain, side view.
PDB entry 399d coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features.
Malinina L, Fernandez LG, Huynh-Dinh T, Subirana JA
J Mol Biol 285 1679-90 (1999)
PMID: 9917405

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116052 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.67 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ELLIOTT GX-21
Spacegroup: P212121
Unit cell:
a: 31.29Å b: 42.602Å c: 45.995Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.165 0.165 0.203
Expression system: Not provided

Quick links

Citations

13 citation in other articles

A unified model for the origin of DNA sequence-directed curvature.
Hud et al. (2003)
12 more

6 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
5 more