› 3adg

X-ray diffraction
1.7Å resolution

Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing

Released:
DOI: 10.2210/pdb3adg/pdb
PDB entry 3adg coloured by chain, front view.
PDB entry 3adg coloured by chain, side view.
PDB entry 3adg coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.
Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan YA
Structure 18 594-605 (2010)
PMID: 20462493

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126446 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Double-stranded RNA-binding protein 1 Chain: A
Molecule details ›
Chain: A
Length: 73 amino acids
Theoretical weight: 8.24 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: O04492 (Residues: 15-84; Coverage: 17%)
Gene names: At1g09700, DRB1, F21M12.9, HYL1
Sequence domains: Double-stranded RNA binding motif
Structure domains: Double Stranded RNA Binding Domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU300
Spacegroup: P212121
Unit cell:
a: 36.388Å b: 37.898Å c: 51.258Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.209 0.207 0.254
Expression system: Escherichia coli

Quick links

Citations

25 review citations

Biogenesis, turnover, and mode of action of plant microRNAs.
Rogers et al. (2013)
24 more

6 mentions without citation

RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence.
Masliah et al. (2013)
5 more