› 3adj

X-ray diffraction
3Å resolution

Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing

Released:
DOI: 10.2210/pdb3adj/pdb
PDB entry 3adj coloured by chain, front view.
PDB entry 3adj coloured by chain, side view.
PDB entry 3adj coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.
Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan YA
Structure 18 594-605 (2010)
PMID: 20462493

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126446 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Double-stranded RNA-binding protein 1 Chain: A
Molecule details ›
Chain: A
Length: 76 amino acids
Theoretical weight: 8.28 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: O04492 (Residues: 100-172; Coverage: 17%)
Gene names: At1g09700, DRB1, F21M12.9, HYL1
Sequence domains: Double-stranded RNA binding motif
Structure domains: Double Stranded RNA Binding Domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P43
Unit cell:
a: 46.108Å b: 46.108Å c: 33.318Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.261 0.255 0.322
Expression system: Escherichia coli

Quick links

Citations

25 review citations

Biogenesis, turnover, and mode of action of plant microRNAs.
Rogers et al. (2013)
24 more

5 mentions without citation

RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence.
Masliah et al. (2013)
4 more