3au6

X-ray diffraction
3.3Å resolution

DNA polymerase X from Thermus thermophilus HB8 ternary complex with primer/template DNA and ddGTP

Released:

Function and Biology Details

Reactions catalysed:
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-116070 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
DNA polymerase beta Chain: A
Molecule details ›
Chain: A
Length: 575 amino acids
Theoretical weight: 64.2 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SJ64 (Residues: 1-575; Coverage: 100%)
Gene name: TTHA1150
Sequence domains:
Structure domains:
5'-D(*CP*AP*GP*TP*AP*TP*(DDG))-3' Chain: P
Molecule details ›
Chain: P
Length: 7 nucleotides
Theoretical weight: 2.12 KDa
Source organism: Thermus thermophilus HB8
Expression system: Not provided
5'-D(*CP*GP*GP*CP*CP*AP*TP*AP*CP*TP*G)-3' Chain: T
Molecule details ›
Chain: T
Length: 11 nucleotides
Theoretical weight: 3.33 KDa
Source organism: Thermus thermophilus HB8
Expression system: Not provided

Ligands and Environments

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: P43212
Unit cell:
a: 80.166Å b: 80.166Å c: 268.555Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.259 0.256 0.319
Expression systems:
  • Escherichia coli
  • Not provided