› 3bde

X-ray diffraction
1.79Å resolution

Crystal structure of a dabb family protein with a ferredoxin-like fold (mll5499) from mesorhizobium loti maff303099 at 1.79 A resolution

Released:
DOI: 10.2210/pdb3bde/pdb
PDB entry 3bde coloured by chain, front view.
PDB entry 3bde coloured by chain, side view.
PDB entry 3bde coloured by chain, top view.
Source organism: Mesorhizobium japonicum MAFF 303099
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189139 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Stress-response A/B barrel domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 120 amino acids
Theoretical weight: 14.35 KDa
Source organism: Mesorhizobium japonicum MAFF 303099
Expression system: Escherichia coli
UniProt:
  • Canonical: Q98BN1 (Residues: 1-101; Coverage: 100%)
Gene name: mll5499
Sequence domains: Stress responsive A/B Barrel Domain
Structure domains: Alpha-Beta Plaits

Ligands and Environments

2 bound ligands:
Ligand ACT 1 x ACT
Ligand EDO 15 x EDO
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: C2
Unit cell:
a: 118.669Å b: 28.415Å c: 76.985Å
α: 90° β: 117.78° γ: 90°
R-values:
R R work R free
0.179 0.177 0.224
Expression system: Escherichia coli

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