› 3bdu

X-ray diffraction
1.9Å resolution

Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.

Released:
DOI: 10.2210/pdb3bdu/pdb
PDB entry 3bdu coloured by chain, front view.
PDB entry 3bdu coloured by chain, side view.
PDB entry 3bdu coloured by chain, top view.
Source organism: Pectobacterium atrosepticum SCRI1043
Entry authors: Kuzin AP, Su M, Seetharaman J, Wang D, Fang Y, Cunningham K, Owens L, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT, Hunt JF, Tong L, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo heptamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179505 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipoprotein YgdI/YgdR-like SH3-like domain-containing protein Chains: A, B, C, D, E, F, G
Molecule details ›
Chains: A, B, C, D, E, F, G
Length: 62 amino acids
Theoretical weight: 7.25 KDa
Source organism: Pectobacterium atrosepticum SCRI1043
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6D8G1 (Residues: 21-73; Coverage: 100%)
Gene name: ECA1013
Sequence domains: Bacterial protein of unknown function (DUF903)
Structure domains: SH3 type barrels.

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 21 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4C
Spacegroup: C2
Unit cell:
a: 105.974Å b: 79.077Å c: 48.472Å
α: 90° β: 96.295° γ: 90°
R-values:
R R work R free
0.21 0.21 0.247
Expression system: Escherichia coli

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