› 3bee

X-ray diffraction
2.15Å resolution

Crystal structure of putative YfrE protein from Vibrio parahaemolyticus

Released:
DOI: 10.2210/pdb3bee/pdb
PDB entry 3bee coloured by chain, front view.
PDB entry 3bee coloured by chain, side view.
PDB entry 3bee coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Chang C, Hatzos C, Abdullah J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183349 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putaive YfrE protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 93 amino acids
Theoretical weight: 10.57 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87ND7 (Residues: 146-235; Coverage: 38%)
Gene name: VP1931
Structure domains: Tetratricopeptide repeat domain

Ligands and Environments

1 bound ligand:
Ligand EDO 4 x EDO
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P43212
Unit cell:
a: 82.383Å b: 82.383Å c: 74.342Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.191 0.214
Expression system: Escherichia coli

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