› 3bfm

X-ray diffraction
1.7Å resolution

Crystal structure of a biotin protein ligase-like protein of unknown function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 A resolution

Released:
DOI: 10.2210/pdb3bfm/pdb
PDB entry 3bfm coloured by chain, front view.
PDB entry 3bfm coloured by chain, side view.
PDB entry 3bfm coloured by chain, top view.
Source organism: Ruegeria sp. TM1040
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172840 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
BPL/LPL catalytic domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 235 amino acids
Theoretical weight: 25.39 KDa
Source organism: Ruegeria sp. TM1040
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1GJN9 (Residues: 1-234; Coverage: 100%)
Gene name: TM1040_0394
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CA 2 x CA
Ligand 2PE 1 x 2PE
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: C2
Unit cell:
a: 86.76Å b: 36.56Å c: 71Å
α: 90° β: 99.28° γ: 90°
R-values:
R R work R free
0.182 0.179 0.226
Expression system: Escherichia coli

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