› 3bh1

X-ray diffraction
2.51Å resolution

Crystal structure of protein DIP2346 from Corynebacterium diphtheriae

Released:
DOI: 10.2210/pdb3bh1/pdb
PDB entry 3bh1 coloured by chain, front view.
PDB entry 3bh1 coloured by chain, side view.
PDB entry 3bh1 coloured by chain, top view.
Source organism: Corynebacterium diphtheriae NCTC 13129
Entry authors: Patskovsky Y, Sridhar V, Bonanno JB, Gilmore M, Iizuka M, Groshong C, Gheyi T, Wasserman SR, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180016 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0371 protein DIP2346 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 507 amino acids
Theoretical weight: 56.41 KDa
Source organism: Corynebacterium diphtheriae NCTC 13129
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6NEC9 (Residues: 2-497; Coverage: 100%)
Gene name: DIP2346
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand GOL 4 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P21
Unit cell:
a: 95.453Å b: 138.936Å c: 98.266Å
α: 90° β: 116.49° γ: 90°
R-values:
R R work R free
0.212 0.211 0.271
Expression system: Escherichia coli

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