› 3bk5

X-ray diffraction
2Å resolution

Crystal structure of putative outer membrane lipoprotein-sorting protein domain from Vibrio parahaemolyticus

Released:
DOI: 10.2210/pdb3bk5/pdb
PDB entry 3bk5 coloured by chain, front view.
PDB entry 3bk5 coloured by chain, side view.
PDB entry 3bk5 coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Entry authors: Wu R, Abdullah J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183363 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hyopothetical protein Chain: A
Molecule details ›
Chain: A
Length: 237 amino acids
Theoretical weight: 27.7 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q87Q63 (Residues: 28-261; Coverage: 98%)
Gene name: VP1287
Sequence domains: Outer membrane lipoprotein-sorting protein
Structure domains: Lipoprotein localisation LolA/LolB/LppX

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21212
Unit cell:
a: 48.157Å b: 128.874Å c: 41.968Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.181 0.179 0.226
Expression system: Escherichia coli BL21

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