› 3bkw

X-ray diffraction
1.6Å resolution

Crystal structure of S-adenosylmethionine dependent methyltransferase (NP_104914.1) from Mesorhizobium loti at 1.60 A resolution

Released:
DOI: 10.2210/pdb3bkw/pdb
PDB entry 3bkw coloured by chain, front view.
PDB entry 3bkw coloured by chain, side view.
PDB entry 3bkw coloured by chain, top view.
Source organism: Mesorhizobium japonicum MAFF 303099
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189145 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Methyltransferase type 11 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 243 amino acids
Theoretical weight: 27.37 KDa
Source organism: Mesorhizobium japonicum MAFF 303099
Expression system: Escherichia coli
UniProt:
  • Canonical: Q98F67 (Residues: 1-242; Coverage: 100%)
Gene name: mll3908
Sequence domains: Methyltransferase domain
Structure domains: Vaccinia Virus protein VP39

Ligands and Environments

1 bound ligand:
Ligand EDO 11 x EDO
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 58.33Å b: 58.48Å c: 142.03Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.173 0.171 0.2
Expression system: Escherichia coli

Quick links