› 3bma

X-ray diffraction
2.24Å resolution

Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6

Released:
DOI: 10.2210/pdb3bma/pdb
PDB entry 3bma coloured by chain, front view.
PDB entry 3bma coloured by chain, side view.
PDB entry 3bma coloured by chain, top view.
Source organism: Streptococcus pneumoniae R6
Entry authors: Patskovsky Y, Sridhar V, Bonanno JB, Smith D, Rutter M, Iizuka M, Koss J, Bain K, Gheyi T, Wasserman SR, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184113 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein DltD Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 407 amino acids
Theoretical weight: 47.17 KDa
Source organism: Streptococcus pneumoniae R6
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8DN13 (Residues: 32-427; Coverage: 93%)
Gene names: dltD, spr1979
Sequence domains: DltD protein

Ligands and Environments

2 bound ligands:
Ligand SO4 14 x SO4
Ligand GOL 10 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P212121
Unit cell:
a: 92.956Å b: 148.064Å c: 208.146Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.216 0.214 0.271
Expression system: Escherichia coli

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