› 3bnn

X-ray diffraction
2Å resolution

Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site

Released:
DOI: 10.2210/pdb3bnn/pdb
PDB entry 3bnn coloured by chain, front view.
PDB entry 3bnn coloured by chain, side view.
PDB entry 3bnn coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates.
Kondo J, Westhof E
Nucleic Acids Res 36 2654-66 (2008)
PMID: 18346970

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196635 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
A site of human ribosome Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 21 nucleotides
Theoretical weight: 6.7 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P1
Unit cell:
a: 34.61Å b: 44.5Å c: 52.36Å
α: 68.77° β: 71.3° γ: 67.72°
R-values:
R R work R free
0.238 0.238 0.264
Expression system: Not provided

Quick links

Citations

5 review citations

The future of aminoglycosides: the end or renaissance?
Houghton et al. (2010)
4 more

3 mentions without citation

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
2 more